If you're using Windows Server 2003, you should have upgraded long ago for reasons other than GPT support. If the size doesn't look right, update your drivers. I recommend checking the disk's apparent size before beginning to use it. Presumably the bugs have been mostly fixed by now however, you might still run into the problem, particularly if you're using an older driver stack. (Typically, you get a disk that looks to be a modulo of 2TiB, so a 3TB disk will appear to be under 1TB in size, for instance.) Problems like this used to be fairly common, but I've seen fewer posts about them recently. There is another caveat: Disk drivers sometimes impose their own 32-bit limits, which can make over-2TiB disks look like they're smaller than 2TiB in size. I might be mis-remembering that, though, so take it with a grain of salt.) (IIRC, Windows Vista picked up GPT support with its Service Pack 1, for instance. From those tables, only the 32-bit versions of Windows Server 2003 and Windows XP lack this support however, I believe there may be some subtleties that these tables omit. The Wikipedia page on GPT provides details for various Windows versions. To be sure, all recent versions of Windows support GPT for data disks however, older versions do not. The question specifies "Windows Server" as the OS, but not the version of Windows Server in use. Twisty and Daniel B have both provided good answers however, there is a major caveat: GPT support depends on the OS in use.
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